some reference papers

Important papers by question (Some of these papers come from a blog I came across with and could not find again. Thanks to that unknown blog)


Is adaptation possible in self-fertilizing species?

http://www.sciencedirect.com/science/article/pii/S0168952517300550

Who will adapt to climate change?

https://www.nature.com/nature/journal/v470/n7335/full/nature09670.html

What is a mutation accumulation line?

http://www.annualreviews.org/doi/10.1146/annurev.ecolsys.39.110707.173437

What is the animal model? (LMM)

http://onlinelibrary.wiley.com/doi/10.1111/j.1365-2656.2009.01639.x/full

Under what circumstances SNPs cannot be identified in GWA?

http://www.nature.com/nrg/journal/v13/n2/full/nrg3118.html

What is heritability?

https://www.nature.com/nrg/journal/v9/n4/full/nrg2322.html

What is missing heritability?

https://www.nature.com/ng/journal/v42/n7/full/ng0710-558.html

How to GWA in plants?

http://onlinelibrary.wiley.com/doi/10.1002/cppb.20041/full

What is population stratification correction in GWA? http://www.nature.com/nrg/journal/v11/n7/full/nrg2813.html

What is a meta-GWA?

https://www.nature.com/nrg/journal/v18/n2/full/nrg.2016.142.html

Population structure? F statistics?

http://www.genetics.org/content/202/4/1485

What is spatial autocorrelation in the data?

http://onlinelibrary.wiley.com/doi/10.1111/j.2007.0906-7590.05171.x/abstract

What is an environmental niche model?

http://onlinelibrary.wiley.com/doi/10.1111/j.1365-2699.2011.02659.x/abstract

What is (really) a selection coefficient?

http://onlinelibrary.wiley.com/doi/10.1111/mec.13559/abstract

What is phenotypic selection?

http://www.jstor.org/stable/2408842

How linkage, inheritance, and sex interfere evolution at multiple locus?

http://www.genetics.org/content/161/4/1727.long

What are the footprints of selection on the genome?

http://www.genetics.org/content/161/4/1727.long

How does multiple testing correction work?

http://www.nature.com/nbt/journal/v27/n12/full/nbt1209-1135.html

What is principal component analysis?

http://www.nature.com/nbt/journal/v26/n3/full/nbt0308-303.html

SNP imputation in association studies

http://www.nature.com/nbt/journal/v27/n4/full/nbt0409-349.html

What is a hidden Markov model?

http://www.nature.com/nbt/journal/v22/n10/full/nbt1004-1315.html

What is a support vector machine?

http://www.nature.com/nbt/journal/v24/n12/full/nbt1206-1565.html

What is the expectation maximization algorithm?

http://www.nature.com/nbt/journal/v26/n8/full/nbt1406.html

What are DNA sequence motifs?

http://www.nature.com/nbt/journal/v24/n4/full/nbt0406-423.html

What are decision trees?

http://www.nature.com/nbt/journal/v26/n9/full/nbt0908-1011.html

What is dynamic programming?

http://www.nature.com/nbt/journal/v22/n7/full/nbt0704-909.html

What are artificial neural networks?

http://www.nature.com/nbt/journal/v26/n2/full/nbt1386.html

How to map billions of short reads onto genomes?

http://www.nature.com/nbt/journal/v27/n5/full/nbt0509-455.html