some reference papers
Important papers by question (Some of these papers come from a blog I came across with and could not find again. Thanks to that unknown blog)
Is adaptation possible in self-fertilizing species?
Who will adapt to climate change?
What is a mutation accumulation line?
What is the animal model? (LMM)
Under what circumstances SNPs cannot be identified in GWA?
What is heritability?
What is missing heritability?
How to GWA in plants?
What is population stratification correction in GWA? http://www.nature.com/nrg/journal/v11/n7/full/nrg2813.html
What is a meta-GWA?
Population structure? F statistics?
What is spatial autocorrelation in the data?
What is an environmental niche model?
What is (really) a selection coefficient?
What is phenotypic selection?
How linkage, inheritance, and sex interfere evolution at multiple locus?
What are the footprints of selection on the genome?
How does multiple testing correction work?
What is principal component analysis?
SNP imputation in association studies
What is a hidden Markov model?
What is a support vector machine?
What is the expectation maximization algorithm?
What are DNA sequence motifs?
What are decision trees?
What is dynamic programming?
What are artificial neural networks?
How to map billions of short reads onto genomes?